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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_9269823_9270775_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9269823 - 9270775
Intron Length:
953

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TCTGTCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAA
U12 Branch Point Sequence:
TGCTGCTGAACG
Flanking Amino Acid:
SIICYYNTYQVVQFNRLPLV
Intron Amino Acid Position:
80

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.1
1.02
0.7
86.6
22.3
Major BPS
67
0.42
1.1
57.3
41.7
Major PPT
83.2
0.75
0.8
77.1
31.6
Minor 5ss
30.6
-2.2
2.6
35.8
41.1
Minor BPS
52.7
-0
2
60.99
46.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024783
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042494
9269549 - 9271812
2264
ENSAPLT00000034621
9269549 - 9272152
2604