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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_9271715_9271814_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9271715 - 9271814
Intron Length:
100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTGA
5'SS Class:
strong_major
3'SS Sequence:
CCGTGTCCTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TTTGTGGTAATT
Flanking Amino Acid:
LKRFLYKKLPSVEGLHAIVV
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
76.7
34.9
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
72.5
0.51
0.9
65.3
36.2
Minor 5ss
45.7
-0.5
2.5
58.5
46
Minor BPS
46.1
-0.2
2.6
74.4
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024783
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034621
9269549 - 9272152
2604