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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_9276984_9279299_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9276984 - 9279299
Intron Length:
2316

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCTTAAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
CTTTTCTTAAAG
Flanking Amino Acid:
RNNCWKERQQKTDLLYAAKV
Intron Amino Acid Position:
340

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
81.6
33.2
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
80.8
0.69
1
82.2
27.1
Minor 5ss
45.5
-0.5
2.8
58.6
40.2
Minor BPS
71
0.52
1.5
72.05
40.8

Associated Gene:

Gene:
DNAJB14
Ensembl Gene ID:
ENSAPLG00000003329
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003412
9276832 - 9300898
24067