About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_9280779_9281421_R


Intron Information:

Intron Rank:
5

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
9280779 - 9281421

Intron Length:
643

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
GAT|GTATGTTTA

5'SS Class:
major

3'SS Sequence:
TTTTCCACCTTAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTTCCAC

U12 Branch Point Sequence:
GATACCTGAATC

Flanking Amino Acid:
GHEREEERGDGGFSMFIQLM

Intron Amino Acid Position:
246

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
78.2
0.66
1
78.8
30.7

Major BPS
67.4
0.43
1.3
78.4
35.2

Major PPT
76.7
0.6
0.7
75.3
28.3

Minor 5ss
58.1
0.27
2.3
70.8
39.9

Minor BPS
61.3
0.33
1.5
66.68
38.2

Associated Gene:

Gene:
DNAJB14

Ensembl Gene ID:

Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

9276832 - 9300898
24067