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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_9285457_9294308_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9285457 - 9294308
Intron Length:
8852

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGCCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
AATATTTTATTT
Flanking Amino Acid:
YTKDQMEGVFSIKKCKNYYE
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
68.7
41.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
95.8
1.03
0.5
92.1
18.3
Minor 5ss
39.5
-1.2
3.3
57
47.3
Minor BPS
52.2
0.15
1.5
67.55
37.7

Associated Gene:

Gene:
DNAJB14
Ensembl Gene ID:
ENSAPLG00000003329
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003412
9276832 - 9300898
24067