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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_9294484_9299796_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9294484 - 9299796
Intron Length:
5313

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
TGTTGTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
ATGCCCGTAATG
Flanking Amino Acid:
QKLYPTDTARVLLEAITKNG
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
72.2
39.5
Major BPS
76.8
0.67
1
66
40.9
Major PPT
86.1
0.81
0.8
80.6
37
Minor 5ss
34.3
-1.8
2.9
43
44.2
Minor BPS
50.4
-0.1
2.1
59.03
43.1

Associated Gene:

Gene:
DNAJB14
Ensembl Gene ID:
ENSAPLG00000003329
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003412
9276832 - 9300898
24067