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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_9338906_9339711_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9338906 - 9339711
Intron Length:
806

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
CCATCTTTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
CTTACTTTATCC
Flanking Amino Acid:
LSVKITAPETGFCSPGDISE
Intron Amino Acid Position:
264

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.85
0.8
83.1
28.6
Major BPS
75.1
0.62
1
65.6
41
Major PPT
70.9
0.47
1
74.7
33.7
Minor 5ss
33.3
-1.9
3.4
45.9
43.7
Minor BPS
61.5
0.34
1.7
70.65
41

Associated Gene:

Gene:
EMCN
Ensembl Gene ID:
ENSAPLG00000003502
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003583
9336996 - 9372490
35495