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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_9339774_9340631_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9339774 - 9340631
Intron Length:
858

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAGGTTGA
5'SS Class:
major
3'SS Sequence:
CTGACTCCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TGTTTCTGACTC
Flanking Amino Acid:
TPERQENGTEQAQLDKEGVK
Intron Amino Acid Position:
243

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.2
0.38
1.1
60
41.8
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
64.7
0.33
1
58.7
37
Minor 5ss
40.4
-1.1
3.1
53.7
44.7
Minor BPS
54.6
0.12
1.7
67.42
38.4

Associated Gene:

Gene:
EMCN
Ensembl Gene ID:
ENSAPLG00000003502
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003583
9336996 - 9372490
35495