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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_9342411_9343865_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9342411 - 9343865
Intron Length:
1455

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
CCTTCTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATGAT
U12 Branch Point Sequence:
AGCAGCAAAATG
Flanking Amino Acid:
KIQEDTIHYSSVILPVVITL
Intron Amino Acid Position:
203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
81
32.8
Major BPS
68
0.45
1
57.8
39
Major PPT
88.3
0.86
0.7
83.5
24.7
Minor 5ss
38.4
-1.3
3
57
41.2
Minor BPS
36.4
-1.1
2.1
35.81
39.6

Associated Gene:

Gene:
EMCN
Ensembl Gene ID:
ENSAPLG00000003502
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003583
9336996 - 9372490
35495