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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_9357101_9357490_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9357101 - 9357490
Intron Length:
390

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTTTCGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
CTATTTTGAATG
Flanking Amino Acid:
AKAMTSSVITGSMPSSTTAK
Intron Amino Acid Position:
81

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
73.6
30.3
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
79.9
0.67
0.7
76.3
25.6
Minor 5ss
27.7
-2.6
3
31.2
36.9
Minor BPS
53.4
-0
1.5
56.06
40.1

Associated Gene:

Gene:
EMCN
Ensembl Gene ID:
ENSAPLG00000003502
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003583
9336996 - 9372490
35495