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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_9357596_9358921_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9357596 - 9358921
Intron Length:
1326

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAGTC
5'SS Class:
strong_major
3'SS Sequence:
GCTTCTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
AAATCAATAAAA
Flanking Amino Acid:
DSTSVSTLTSVPKTVSMSSS
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
75.1
33.1
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
82.9
0.74
0.8
76.8
31.8
Minor 5ss
35.1
-1.7
3.5
47.6
42.6
Minor BPS
47.7
-0.1
1.9
60.39
38

Associated Gene:

Gene:
EMCN
Ensembl Gene ID:
ENSAPLG00000003502
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003583
9336996 - 9372490
35495