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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_9487150_9498133_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9487150 - 9498133
Intron Length:
10984

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAACATT
5'SS Class:
major
3'SS Sequence:
TTTCTTCCAACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
AATGCCATAACA
Flanking Amino Acid:
NTVRGCSYFYSYPAVCEFLQ
Intron Amino Acid Position:
249

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.69
0.9
80.2
34.3
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
81.5
0.71
0.8
78
29.4
Minor 5ss
39.2
-1.2
3.2
56.9
47.4
Minor BPS
62.5
0.39
1.7
72.33
39.1

Associated Gene:

Gene:
PPP3CA
Ensembl Gene ID:
ENSAPLG00000003728
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003884
9453793 - 9641378
187586
ENSAPLT00000032194
9453793 - 9616726
162934
ENSAPLT00000030523
9453793 - 9564087
110295