About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_9498274_9500599_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9498274 - 9500599
Intron Length:
2326

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
CTATTTTTCTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAA
U12 Branch Point Sequence:
TGTCTCCTATTT
Flanking Amino Acid:
EINTLDDIRKLDRFKEPPAY
Intron Amino Acid Position:
203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.81
0.9
75.5
40.6
Major BPS
79.4
0.73
0.9
69.6
37.5
Major PPT
80.8
0.69
0.8
80.7
31
Minor 5ss
39.5
-1.2
3
50.7
39.9
Minor BPS
48.6
-0
1.9
70.65
40.3

Associated Gene:

Gene:
PPP3CA
Ensembl Gene ID:
ENSAPLG00000003728
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032194
9453793 - 9616726
162934
ENSAPLT00000030523
9453793 - 9564087
110295
ENSAPLT00000003884
9453793 - 9641378
187586