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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_9501836_9511050_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9501836 - 9511050
Intron Length:
9215

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTCTGCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TATAAATTATGT
Flanking Amino Acid:
YVDRGYFSIECVLYLWALKI
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
85.1
25.6
Major BPS
78.6
0.71
1
78.6
31
Major PPT
85.8
0.81
0.8
80.4
31.6
Minor 5ss
46.5
-0.4
2.7
61.9
36.7
Minor BPS
43.1
-0.4
2.2
64.5
45

Associated Gene:

Gene:
PPP3CA
Ensembl Gene ID:
ENSAPLG00000003728
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032194
9453793 - 9616726
162934
ENSAPLT00000030523
9453793 - 9564087
110295
ENSAPLT00000003884
9453793 - 9641378
187586