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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_9511176_9563825_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9511176 - 9563825
Intron Length:
52650

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTATG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAA
U12 Branch Point Sequence:
TGAAACTGAATA
Flanking Amino Acid:
NLLDIDAPVTVCGDIHGQFF
Intron Amino Acid Position:
75

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
1.1
83
36.1
Major BPS
65.6
0.39
0.9
55.4
32.7
Major PPT
92.6
0.96
0.6
88.3
21.3
Minor 5ss
35.7
-1.6
2.6
42.8
44.1
Minor BPS
49.6
-0
1.7
60.43
38.7

Associated Gene:

Gene:
PPP3CA
Ensembl Gene ID:
ENSAPLG00000003728
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030523
9453793 - 9564087
110295
ENSAPLT00000003884
9453793 - 9641378
187586
ENSAPLT00000032194
9453793 - 9616726
162934