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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_951568_951726_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
951568 - 951726
Intron Length:
159

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TGCCTCTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
AAATAATTAATG
Flanking Amino Acid:
LNGIVHRDLKFASLQA*
Intron Amino Acid Position:
347

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1.2
85.3
32.2
Major BPS
83
0.82
0.8
82
24.9
Major PPT
81.2
0.7
0.8
72.6
37.6
Minor 5ss
35.7
-1.6
2.7
45.8
42.3
Minor BPS
49.4
-0.1
1.8
54.71
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022710
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018641
951004 - 1064888
113885