About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_9564027_9641356_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9564027 - 9641356
Intron Length:
77330

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCATGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTTTTCTTCATG
Flanking Amino Acid:
MSLVLSRAVPFPPSHRL
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
77.5
32.9
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
85.6
0.8
0.8
81.6
29.2
Minor 5ss
34.2
-1.8
2.9
42.1
45
Minor BPS
66.2
0.36
1.8
74.4
38.6

Associated Gene:

Gene:
PPP3CA
Ensembl Gene ID:
ENSAPLG00000003728
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003884
9453793 - 9641378
187586