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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_9758244_9759468_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9758244 - 9759468
Intron Length:
1225

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTAATTTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
CATATTTTAATT
Flanking Amino Acid:
LVLPERISCENPGEIFILLK
Intron Amino Acid Position:
189

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.8
88.6
27.1
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
82.1
0.72
0.8
76.8
37
Minor 5ss
42.7
-0.8
3.4
64.1
47.4
Minor BPS
64.1
0.52
1.3
72.89
38.6

Associated Gene:

Gene:
BANK1
Ensembl Gene ID:
ENSAPLG00000013524
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014081
9719865 - 9851686
131822
ENSAPLT00000014064
9738492 - 9851686
113195
ENSAPLT00000023441
9738492 - 9851686
113195