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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_9759608_9761675_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9759608 - 9761675
Intron Length:
2068

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TGTGTTTTATAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
CTGTTCTGATTT
Flanking Amino Acid:
NKKVKYMKALDFPAGPVYIN
Intron Amino Acid Position:
235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
67.2
0.39
1.2
72.7
41.5
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
50.3
0.09
1.7
67.76
43.8

Associated Gene:

Gene:
BANK1
Ensembl Gene ID:
ENSAPLG00000013524
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023441
9738492 - 9851686
113195
ENSAPLT00000014081
9719865 - 9851686
131822
ENSAPLT00000014064
9738492 - 9851686
113195