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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_9779672_9829315_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9779672 - 9829315
Intron Length:
49644

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTTCA
5'SS Class:
major
3'SS Sequence:
TTTTTCTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATTAC
U12 Branch Point Sequence:
ATTACCCAAACC
Flanking Amino Acid:
ELRKLIKELSNDVTDNCTDQ
Intron Amino Acid Position:
389

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
71.7
34.4
Major BPS
66
0.4
1.1
57.8
38.6
Major PPT
92.1
0.95
0.5
89.1
19.9
Minor 5ss
42.7
-0.8
2.7
56.3
41.9
Minor BPS
52.7
0.06
2
70.61
40.2

Associated Gene:

Gene:
BANK1
Ensembl Gene ID:
ENSAPLG00000013524
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014064
9738492 - 9851686
113195
ENSAPLT00000023441
9738492 - 9851686
113195
ENSAPLT00000014081
9719865 - 9851686
131822