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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_9831087_9833800_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9831087 - 9833800
Intron Length:
2714

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGATTT
5'SS Class:
strong_major
3'SS Sequence:
CTCGCTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATGAAA
U12 Branch Point Sequence:
TTTGCCCTACCT
Flanking Amino Acid:
RQDELHSFSQERNFMEDRRD
Intron Amino Acid Position:
523

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
83.3
29.2
Major BPS
57.6
0.19
1.3
67.9
36.3
Major PPT
82.4
0.73
0.8
79.8
32.2
Minor 5ss
50
0
2.8
73.4
43.4
Minor BPS
59
0.36
2.1
84.58
42.1

Associated Gene:

Gene:
BANK1
Ensembl Gene ID:
ENSAPLG00000013524
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014064
9738492 - 9851686
113195
ENSAPLT00000023441
9738492 - 9851686
113195
ENSAPLT00000014081
9719865 - 9851686
131822