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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_9834083_9842964_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9834083 - 9842964
Intron Length:
8882

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CTTAACTTTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
ATGTTCTTAACT
Flanking Amino Acid:
RNENTPYIVQVFQQKATQMP
Intron Amino Acid Position:
617

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
1.2
78.8
35.5
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
75.8
0.58
0.9
69.7
36.2
Minor 5ss
30.7
-2.2
3.1
42.2
44.4
Minor BPS
83
1.11
1
89.94
34.1

Associated Gene:

Gene:
BANK1
Ensembl Gene ID:
ENSAPLG00000013524
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023441
9738492 - 9851686
113195
ENSAPLT00000014081
9719865 - 9851686
131822
ENSAPLT00000014064
9738492 - 9851686
113195