About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_9845056_9851636_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9845056 - 9851636
Intron Length:
6581

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAATC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATACAT
U12 Branch Point Sequence:
TATTCGTTAATT
Flanking Amino Acid:
ENRRPQSALQCPTRTPTHKE
Intron Amino Acid Position:
702

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
80.7
31.7
Major BPS
74.9
0.62
1
81.3
29.9
Major PPT
89.2
0.88
0.6
88.7
20.6
Minor 5ss
44.1
-0.6
2.8
60.5
44.2
Minor BPS
71.7
0.76
2
89.11
35.7

Associated Gene:

Gene:
BANK1
Ensembl Gene ID:
ENSAPLG00000013524
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023441
9738492 - 9851686
113195
ENSAPLT00000014081
9719865 - 9851686
131822
ENSAPLT00000014064
9738492 - 9851686
113195