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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_9889950_9892683_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9889950 - 9892683
Intron Length:
2734

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGAACG
5'SS Class:
major
3'SS Sequence:
TGCCTTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATTAT
U12 Branch Point Sequence:
CTTACCTAAAAT
Flanking Amino Acid:
MFLYISLADMFPEMNDMLRE
Intron Amino Acid Position:
393

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
0.9
66.9
38.2
Major BPS
68.1
0.45
1
58.1
38.5
Major PPT
83.9
0.76
0.8
76.1
37.8
Minor 5ss
28.5
-2.5
2.7
29.9
36.3
Minor BPS
59.6
0.38
1.9
77.96
44

Associated Gene:

Gene:
SLC39A8
Ensembl Gene ID:
ENSAPLG00000013616
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014186
9889803 - 9913125
23323