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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_9892869_9893391_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9892869 - 9893391
Intron Length:
523

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGAAC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
CATTTCTCATTT
Flanking Amino Acid:
ILCEEFPHELGDFVILLSAG
Intron Amino Acid Position:
331

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
82.1
31
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
85.6
0.8
0.6
84.6
23.1
Minor 5ss
32.6
-2
3.1
42.1
45
Minor BPS
50.3
0.09
1.8
68.67
42.7

Associated Gene:

Gene:
SLC39A8
Ensembl Gene ID:
ENSAPLG00000013616
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014186
9889803 - 9913125
23323