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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_9900185_9900721_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9900185 - 9900721
Intron Length:
537

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCAAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCAATGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
TTGTCTTCAATG
Flanking Amino Acid:
SNAIFQLIPEAFGFDPKVDN
Intron Amino Acid Position:
165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.8
87
30
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
67.7
0.4
1
67.4
38
Minor 5ss
41
-1
2.9
56.9
47.4
Minor BPS
63.5
0.29
1.6
67.18
41.3

Associated Gene:

Gene:
SLC39A8
Ensembl Gene ID:
ENSAPLG00000013616
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014186
9889803 - 9913125
23323