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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_9906234_9912972_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9906234 - 9912972
Intron Length:
6739

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCGCCG
5'SS Class:
major
3'SS Sequence:
CTTTTTGTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTTAT
U12 Branch Point Sequence:
ATTGTATTAAGT
Flanking Amino Acid:
QLLPQPQHNQCLTGEEIFSL
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.1
0.31
1.3
48.8
47.3
Major BPS
72.5
0.56
1.2
63.4
44
Major PPT
83.5
0.75
0.8
76.9
37.3
Minor 5ss
35.2
-1.7
3.5
47.9
47.8
Minor BPS
52.6
0.16
2
74.82
42.1

Associated Gene:

Gene:
SLC39A8
Ensembl Gene ID:
ENSAPLG00000013616
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014186
9889803 - 9913125
23323