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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_9974347_9981309_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9974347 - 9981309
Intron Length:
6963

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTATTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTATCTTTATTT
Flanking Amino Acid:
KNKKSFPQVKICNYVGPAKV
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
77.2
31
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
89.4
0.89
0.7
84.1
29.7
Minor 5ss
35.5
-1.6
2.9
42.3
38.1
Minor BPS
70.4
0.72
1.5
84.48
36.6

Associated Gene:

Gene:
NFKB1
Ensembl Gene ID:
ENSAPLG00000013878
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014534
9962245 - 10005442
43198
ENSAPLT00000024529
9962245 - 10005442
43198