Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_9983082_9984333_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9983082 - 9984333

Intron Length:

1252

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTATGTGGA

5'SS Class:

major

3'SS Sequence:

TTGTTGGTTCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTAAT

U12 Branch Point Sequence:

TTTGTGTTAATT

Flanking Amino Acid:

AEGCGERQLTEREREIIRQA

Intron Amino Acid Position:

195

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.8

0.68

66.8

38.7

Major BPS

84.4

0.85

34.5

Major PPT

0.63

69.2

46.1

Minor 5ss

38.3

-1.3

3.1

46.2

44.4

Minor BPS

60.4

0.4

2.1

82.74

39.5

Associated Gene:

Gene:

NFKB1

Ensembl Gene ID:

ENSAPLG00000013878

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014534

9962245 - 10005442

43198

ENSAPLT00000024529

9962245 - 10005442

43198