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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_9988279_9989562_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9988279 - 9989562
Intron Length:
1284

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTCAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTGACTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGACAT
U12 Branch Point Sequence:
GTTTCTCTGACT
Flanking Amino Acid:
KPFLYYPEIKDCSLEFSLLV
Intron Amino Acid Position:
360

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
79.8
35.1
Major BPS
59.8
0.24
1.2
67
39.8
Major PPT
71.4
0.48
1
67
39.2
Minor 5ss
36
-1.6
3
50.1
46.1
Minor BPS
66.9
0.61
1.6
84.88
35.3

Associated Gene:

Gene:
NFKB1
Ensembl Gene ID:
ENSAPLG00000013878
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024529
9962245 - 10005442
43198