About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_9988279_9990697_F

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
9988279 - 9990697
Intron Length:
2419

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTCAT
5'SS Class:
strong_major
3'SS Sequence:
ACCTGAAACGCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
CTCACCTGAAAC
Flanking Amino Acid:
KPFLYYPEIKDKEEVQRKRQ
Intron Amino Acid Position:
360

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
79.8
35.1
Major BPS
85
0.87
0.8
85.6
23
Major PPT
55.8
0.13
1
48.1
37.9
Minor 5ss
36
-1.6
3
50.1
46.1
Minor BPS
53.1
0.08
1.7
61.4
43.4

Associated Gene:

Gene:
NFKB1
Ensembl Gene ID:
ENSAPLG00000013878
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014534
9962245 - 10005442
43198