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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_9989608_9990697_F

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
9989608 - 9990697
Intron Length:
1090

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGCGTGCA
5'SS Class:
major
3'SS Sequence:
ACCTGAAACGCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
CTCACCTGAAAC
Flanking Amino Acid:
FSLLVSVSMPDKEEVQRKRQ
Intron Amino Acid Position:
375

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1
64
35.9
Major BPS
85
0.87
0.8
85.6
23
Major PPT
55.8
0.13
1
48.1
37.9
Minor 5ss
26.6
-2.7
3.1
29.3
38.1
Minor BPS
53.1
0.08
1.7
61.4
43.4

Associated Gene:

Gene:
NFKB1
Ensembl Gene ID:
ENSAPLG00000013878
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024529
9962245 - 10005442
43198