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Intron Name: Anas_platyrhynchos_platyrhynchos_4_9990821_9991613_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9990821 - 9991613

Intron Length:

793

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGACAG

5'SS Class:

strong_major

3'SS Sequence:

TTCCTTTCTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTAAT

U12 Branch Point Sequence:

TAATTCTTAATC

Flanking Amino Acid:

YGGGGSGAGSGFSYPSYGYS

Intron Amino Acid Position:

401

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.8

0.73

64.3

41.6

Major BPS

0.92

0.9

86.2

29.1

Major PPT

85.2

0.79

0.6

84.8

22.9

Minor 5ss

31.4

-2.1

3.1

36.3

41.6

Minor BPS

76.1

0.8

1.1

76.13

33.7

Associated Gene:

Gene:

NFKB1

Ensembl Gene ID:

ENSAPLG00000013878

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014534

9962245 - 10005442

43198

ENSAPLT00000024529

9962245 - 10005442

43198