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Intron Name: Anas_platyrhynchos_platyrhynchos_4_9992827_9994970_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9992827 - 9994970

Intron Length:

2144

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAAGTGAA

5'SS Class:

strong_major

3'SS Sequence:

CTTTGCCTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AGCTGAT

U12 Branch Point Sequence:

GGAGACCAAACT

Flanking Amino Acid:

EVNEADCRWQDGPFLEKAMQ

Intron Amino Acid Position:

498

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.7

0.86

0.9

77.6

32.8

Major BPS

67.4

0.43

1.1

57.1

41.8

Major PPT

83.5

0.75

0.8

77.1

31.6

Minor 5ss

31.6

-2.1

3.1

31.7

42.6

Minor BPS

41.3

-0.5

2.1

56.43

44.9

Associated Gene:

Gene:

NFKB1

Ensembl Gene ID:

ENSAPLG00000013878

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024529

9962245 - 10005442

43198

ENSAPLT00000014534

9962245 - 10005442

43198