Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_10000247_10004315_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10000247 - 10004315

Intron Length:

4069

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGGGGA

5'SS Class:

strong_major

3'SS Sequence:

CTCCCTCCAACAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATCTAAC

U12 Branch Point Sequence:

CTCCCTCCAACA

Flanking Amino Acid:

LWAWAAAAGAAIGFGMDPDL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.2

0.81

0.9

69.2

37.4

Major BPS

75.8

0.64

0.9

75.6

25.3

Major PPT

70.5

0.46

0.8

65.5

28.9

Minor 5ss

23.1

-3.1

3.2

43.5

Minor BPS

46.5

-0.2

1.9

57.53

Associated Gene:

Gene:

NELL1

Ensembl Gene ID:

ENSAPLG00000008616

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032625

9721390 - 10004429

283040

ENSAPLT00000047539

9721390 - 10004429

283040

ENSAPLT00000029717

9721390 - 10004429

283040

ENSAPLT00000046758

9721390 - 10004429

283040

ENSAPLT00000008960

9721327 - 10004429

283103

ENSAPLT00000044680

9723279 - 10004429

281151

ENSAPLT00000039500

9721390 - 10004429

283040