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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_10026048_10026333_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10026048 - 10026333
Intron Length:
286

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAAACTG
5'SS Class:
major
3'SS Sequence:
TTTTGTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
GTGTGCTGAAAT
Flanking Amino Acid:
MLLTLGLDTMFATIETIVTS
Intron Amino Acid Position:
511

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1
61.5
43
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
90.9
0.92
0.7
88.9
28.1
Minor 5ss
35.1
-1.7
3.3
44.8
44.2
Minor BPS
50.3
0.09
2
71.17
45

Associated Gene:

Gene:
SLC6A5
Ensembl Gene ID:
ENSAPLG00000007647
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027662
10013596 - 10043898
30303
ENSAPLT00000007980
10013902 - 10043898
29997