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Intron Name: Anas_platyrhynchos_platyrhynchos_5_10032088_10034573_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10032088 - 10034573

Intron Length:

2486

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGTAAG

5'SS Class:

strong_major

3'SS Sequence:

GTTTTCTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATTAAA

U12 Branch Point Sequence:

TTAAAAACAAGG

Flanking Amino Acid:

SYNKFHNNCYRDTLIVTCTN

Intron Amino Acid Position:

431

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.3

0.9

79.7

35.4

Major BPS

82.6

0.81

0.8

82.2

24.5

Major PPT

89.8

0.89

0.7

84.7

30.1

Minor 5ss

41.2

-1

2.5

50.1

46.4

Minor BPS

34.2

-1.3

2.1

41.17

Associated Gene:

Gene:

SLC6A5

Ensembl Gene ID:

ENSAPLG00000007647

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027662

10013596 - 10043898

30303

ENSAPLT00000007980

10013902 - 10043898

29997