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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_10040938_10041856_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10040938 - 10041856
Intron Length:
919

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTTAT
U12 Branch Point Sequence:
TTTTCCTTTTTT
Flanking Amino Acid:
SVWKAIPALQDSCIIGDQPK
Intron Amino Acid Position:
260

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
65.8
40.2
Major BPS
64.7
0.37
1.2
55.4
41.7
Major PPT
87.9
0.85
0.7
81
31
Minor 5ss
33.7
-1.9
3
42.6
44.4
Minor BPS
48.5
-0
3.6
87.87
37.8

Associated Gene:

Gene:
SLC6A5
Ensembl Gene ID:
ENSAPLG00000007647
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007980
10013902 - 10043898
29997