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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_10041765_10041856_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10041765 - 10041856
Intron Length:
92

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
TGCTCTTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGTGAT
U12 Branch Point Sequence:
TGCTCTTTCCTA
Flanking Amino Acid:
SVWKAIPALQGCGIAMLIIS
Intron Amino Acid Position:
260

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
65.8
40.2
Major BPS
66.1
0.4
1.3
57.1
49.4
Major PPT
75.7
0.58
0.8
68.9
37.1
Minor 5ss
33.7
-1.9
3
42.6
44.4
Minor BPS
39.7
-0.7
3.5
58.91
41.9

Associated Gene:

Gene:
SLC6A5
Ensembl Gene ID:
ENSAPLG00000007647
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027662
10013596 - 10043898
30303