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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_10074301_10074740_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10074301 - 10074740
Intron Length:
440

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTTA
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTTATATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TATTTCTTATAT
Flanking Amino Acid:
LLEKPIPVEAGTCMGVVPGT
Intron Amino Acid Position:
348

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
85.8
25.5
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
78.3
0.64
0.9
73.9
35.2
Minor 5ss
49.9
-0
2.4
66.7
44.7
Minor BPS
65.4
0.56
1.7
82.24
38.7

Associated Gene:

Gene:
PRMT3
Ensembl Gene ID:
ENSAPLG00000006907
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036850
10071938 - 10117175
45238