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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_10074829_10086123_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10074829 - 10086123
Intron Length:
11295

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTCAGTATC
5'SS Class:
major
3'SS Sequence:
TCTTCCATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TGTTCTTTAATG
Flanking Amino Acid:
TVRHLISLRMVLFSTGPWCT
Intron Amino Acid Position:
394

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.3
77.9
36.8
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
83.5
0.75
0.8
77.8
29.3
Minor 5ss
35.9
-1.6
2.7
43.6
37.6
Minor BPS
77.8
0.74
1.2
75.88
36.1

Associated Gene:

Gene:
PRMT3
Ensembl Gene ID:
ENSAPLG00000006907
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041075
10065244 - 10120561
55318