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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_10075792_10086150_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10075792 - 10086150
Intron Length:
10359

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGACAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTGTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
GTGTAACTAATA
Flanking Amino Acid:
LTITTSTKCTIFSISFITEA
Intron Amino Acid Position:
302

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
72
39.5
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
84.5
0.78
0.9
80.6
37
Minor 5ss
34.1
-1.8
3.3
49.3
46.4
Minor BPS
45.8
-0.3
2
59.4
40

Associated Gene:

Gene:
PRMT3
Ensembl Gene ID:
ENSAPLG00000006907
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042592
10075711 - 10117175
41465