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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_10089090_10094192_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10089090 - 10094192
Intron Length:
5103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGTGCG
5'SS Class:
major
3'SS Sequence:
TTTGTTGTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
TATGTCTAAAAA
Flanking Amino Acid:
KDKYLAGGGSVYPDICTISL
Intron Amino Acid Position:
283

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.2
61.8
43
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
85.4
0.8
0.9
79.9
37.7
Minor 5ss
28
-2.5
3.1
32.9
42.1
Minor BPS
51.3
0.04
1.9
65.11
41.3

Associated Gene:

Gene:
PRMT3
Ensembl Gene ID:
ENSAPLG00000006907
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041075
10065244 - 10120561
55318
ENSAPLT00000036850
10071938 - 10117175
45238
ENSAPLT00000032537
10086476 - 10120531
34056
ENSAPLT00000007208
10065244 - 10120531
55288
ENSAPLT00000042592
10075711 - 10117175
41465