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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_10094272_10103472_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10094272 - 10103472
Intron Length:
9201

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTGAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATGAC
U12 Branch Point Sequence:
TTTTTGTGAACA
Flanking Amino Acid:
KVDVIISEWMGYFLLFESML
Intron Amino Acid Position:
257

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1
72.2
39.9
Major BPS
67
0.42
1.1
57.7
39
Major PPT
76.2
0.59
1
73.3
40.9
Minor 5ss
38.6
-1.3
3.4
52.7
46.4
Minor BPS
60.6
0.33
2.2
79.77
36.3

Associated Gene:

Gene:
PRMT3
Ensembl Gene ID:
ENSAPLG00000006907
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041075
10065244 - 10120561
55318
ENSAPLT00000036850
10071938 - 10117175
45238
ENSAPLT00000032537
10086476 - 10120531
34056
ENSAPLT00000007208
10065244 - 10120531
55288
ENSAPLT00000042592
10075711 - 10117175
41465