About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_10103573_10107074_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10103573 - 10107074
Intron Length:
3502

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTATTTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TTTATATTATTT
Flanking Amino Acid:
EIIYQAMDIIRSNKLENIIT
Intron Amino Acid Position:
223

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
1
76.9
33.7
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
89.3
0.88
0.7
84.4
30.3
Minor 5ss
31.4
-2.1
3.1
39.2
46.2
Minor BPS
53.8
0.2
1.9
77.45
39.2

Associated Gene:

Gene:
PRMT3
Ensembl Gene ID:
ENSAPLG00000006907
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041075
10065244 - 10120561
55318
ENSAPLT00000036850
10071938 - 10117175
45238
ENSAPLT00000032537
10086476 - 10120531
34056
ENSAPLT00000007208
10065244 - 10120531
55288
ENSAPLT00000042592
10075711 - 10117175
41465