Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_10107197_10111582_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10107197 - 10111582

Intron Length:

4386

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGTAAA

5'SS Class:

strong_major

3'SS Sequence:

ATACTTATTTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TACTTAT

U12 Branch Point Sequence:

TTATACTTATTT

Flanking Amino Acid:

YQNPHIFKDKVVLDVGCGTG

Intron Amino Acid Position:

183

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.89

0.9

83.2

30.8

Major BPS

83.6

0.84

0.8

71.9

35.8

Major PPT

77.8

0.63

0.9

74.7

39.1

Minor 5ss

33.6

-1.9

41.3

45.3

Minor BPS

63.8

0.51

1.8

82.01

39.4

Associated Gene:

Gene:

PRMT3

Ensembl Gene ID:

ENSAPLG00000006907

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036850

10071938 - 10117175

45238

ENSAPLT00000032537

10086476 - 10120531

34056

ENSAPLT00000007208

10065244 - 10120531

55288

ENSAPLT00000042592

10075711 - 10117175

41465

ENSAPLT00000041075

10065244 - 10120561

55318