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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_10114805_10117027_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10114805 - 10117027
Intron Length:
2223

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGAGCT
5'SS Class:
strong_major
3'SS Sequence:
AAATTGATTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TGTATTTCAAAT
Flanking Amino Acid:
ARAQEDLQKMKQFAQDFVMN
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
0.9
75.3
32.6
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
67.5
0.39
1.1
58.9
45.2
Minor 5ss
34.8
-1.7
3.5
49.1
41
Minor BPS
51.5
0.12
1.6
70.83
39.8

Associated Gene:

Gene:
PRMT3
Ensembl Gene ID:
ENSAPLG00000006907
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036850
10071938 - 10117175
45238
ENSAPLT00000032537
10086476 - 10120531
34056
ENSAPLT00000007208
10065244 - 10120531
55288
ENSAPLT00000042592
10075711 - 10117175
41465
ENSAPLT00000041075
10065244 - 10120561
55318