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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_10250535_10250736_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10250535 - 10250736
Intron Length:
202

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
CCCTCCCGCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
CTTTACTGAACG
Flanking Amino Acid:
AAKLGLKDSQVKIWFQNRRM
Intron Amino Acid Position:
298

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
72.2
39.5
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
65.4
0.35
0.9
56.8
33.4
Minor 5ss
26.6
-2.7
3
31.5
42.8
Minor BPS
62.4
0.25
1.8
69.51
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028007
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045604
10248219 - 10251114
2896