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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_10264712_10265877_R

Intron Information:

Intron Rank:
38
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10264712 - 10265877
Intron Length:
1166

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TGTGCCTTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATCAT
U12 Branch Point Sequence:
TAATCATGAACT
Flanking Amino Acid:
PVSDAEGDPLMNMLMRLQEA
Intron Amino Acid Position:
2269

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.2
29.3
Major BPS
80.4
0.76
1
80.3
31.8
Major PPT
75.7
0.58
0.9
69.9
36.5
Minor 5ss
43
-0.8
2.8
56.6
41.9
Minor BPS
64
0.52
1.7
81.11
39.4

Associated Gene:

Gene:
NAV2
Ensembl Gene ID:
ENSAPLG00000013035
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027167
10263981 - 10487724
223744
ENSAPLT00000045174
10263981 - 10487724
223744
ENSAPLT00000013632
10264586 - 10435226
170641
ENSAPLT00000039571
10263981 - 10487724
223744
ENSAPLT00000032702
10263981 - 10487724
223744
ENSAPLT00000029760
10263981 - 10487724
223744