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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_10274604_10276279_R

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10274604 - 10276279
Intron Length:
1676

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTACTGTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
GTTGCTATAAAT
Flanking Amino Acid:
ENNTISVTIKGICENSLDCL
Intron Amino Acid Position:
1941

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
77
31.5
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
82.5
0.73
0.9
76.9
37.1
Minor 5ss
33
-1.9
3.1
42.1
44.5
Minor BPS
54.1
0.21
1.8
74.97
41.5

Associated Gene:

Gene:
NAV2
Ensembl Gene ID:
ENSAPLG00000013035
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027167
10263981 - 10487724
223744
ENSAPLT00000045174
10263981 - 10487724
223744
ENSAPLT00000013632
10264586 - 10435226
170641
ENSAPLT00000039571
10263981 - 10487724
223744
ENSAPLT00000032702
10263981 - 10487724
223744
ENSAPLT00000029760
10263981 - 10487724
223744